PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc003167.1_g00003.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family ERF
Protein Properties Length: 224aa    MW: 24395.3 Da    PI: 7.0613
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc003167.1_g00003.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.19.1e-1849100156
                      AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                              + y+GVr++    +Wv+e+r+p   +k+ r++lg+f t+e+Aa+a++ a+++l+ge
  Itr_sc003167.1_g00003.1  49 PVYRGVRRRN-EDKWVCEVREP---NKKSRIWLGTFATPEMAARAHDVAALALRGE 100
                              68*****887.8******9998...347**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.2E-1349100IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.3E-3050107IPR001471AP2/ERF domain
SuperFamilySSF541711.57E-2050107IPR016177DNA-binding domain
PROSITE profilePS5103221.81250107IPR001471AP2/ERF domain
SMARTSM003806.4E-2950113IPR001471AP2/ERF domain
CDDcd000182.27E-2551107No hitNo description
PRINTSPR003671.5E-75162IPR001471AP2/ERF domain
PRINTSPR003671.5E-77389IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 224 aa     Download sequence    Send to blast
MDFENDGNSS SSSSSSSSQE IAGDQAVAVA PVLQKRRAGR KKFRETRHPV YRGVRRRNED  60
KWVCEVREPN KKSRIWLGTF ATPEMAARAH DVAALALRGE AAALNFPGAS ESLPRAASCS  120
PADIRAAALQ LAYAPPPHPQ FPSANAVDRD HAKEAASSSR TIDLPGLDFF RNASSFLDEE  180
AVFNLPALLD NMAEGMLITP PAMKKGFSWG DEGDGIDLTL WKHY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-14481071272Ethylene-responsive transcription factor ERF096
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019161981.11e-130PREDICTED: dehydration-responsive element-binding protein 1F-like
TrEMBLA0A1S3Y7624e-76A0A1S3Y762_TOBAC; dehydration-responsive element-binding protein 1F-like
STRINGXP_009624061.11e-76(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA26324183
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25490.15e-38C-repeat/DRE binding factor 1