PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc003178.1_g00001.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family Trihelix
Protein Properties Length: 189aa    MW: 21222.5 Da    PI: 11.4584
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc003178.1_g00001.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix33.61e-1058121160
                 trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkr 60 
                              +W+k  v  L+ea++ ++   +r+klk+++W++v +++     +++  ++++qCk+k+e+++kr
  Itr_sc003178.1_g00001.1  58 EWSKGAVSSLLEAYEAKWVLRNRAKLKGQDWDDVVRHVsargNSTKSPKTQTQCKNKIESMKKR 121
                              5************************************954445555567888**********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.2E-1256122No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 189 aa     Download sequence    Send to blast
MREGMDTLQE PANNKNTSKE NPSLLSNGGP KPKQESPRSL ATAATTVMAA SDRLKRDEWS  60
KGAVSSLLEA YEAKWVLRNR AKLKGQDWDD VVRHVSARGN STKSPKTQTQ CKNKIESMKK  120
RTDRCPPPPP TPRRGRSILA SISSSMGMLP LISLNRLFFP RHRFLCRNSS RRCLLLRCSP  180
LQASLTRHL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019185327.18e-65PREDICTED: FH2 domain-containing protein 1
TrEMBLA0A059BI693e-40A0A059BI69_EUCGR; Uncharacterized protein
TrEMBLA0A314U8493e-40A0A314U849_PRUYE; Trihelix transcription factor ASIL2
STRINGcassava4.1_012929m3e-41(Manihot esculenta)
STRINGXP_010067722.15e-41(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA122511620
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54390.13e-38sequence-specific DNA binding transcription factors