PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc003236.1_g00002.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

M-type_MADS

Protein Properties

Length: 139aa MW: 15623.1 Da PI: 10.4005

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc003236.1_g00002.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	68.4	6.6e-22	21	70	2	51
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 rien+ r vtfskR + ++KKA+E+S+LC++e+a+++fs++gk +++s+ Itr_sc003236.1_g00002.1 21 RIENEVHRLVTFSKRCTSLFKKASEMSTLCGTEIAMVVFSPSGKPFTFSN 70 9***********************************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	2.4E-23	12	71	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	22.792	12	72	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	1.06E-23	13	86	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.4E-17	14	34	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	3.8E-23	21	68	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.4E-17	34	49	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.4E-17	49	70	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 139 aa Download sequence Send to blast
MSLRNTSRGV TRGRHRVLLA RIENEVHRLV TFSKRCTSLF KKASEMSTLC GTEIAMVVFS 60 PSGKPFTFSN PDMDTVLTKY FGEIPTTDAN IIRPIIHAHQ EAKMRAMTSQ INILEAQIDE 120 EMLVNQALRE AKKGRSSIA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3kov_A	1e-16	13	80	1	68	Myocyte-specific enhancer factor 2A
3kov_B	1e-16	13	80	1	68	Myocyte-specific enhancer factor 2A
3kov_I	1e-16	13	80	1	68	Myocyte-specific enhancer factor 2A
3kov_J	1e-16	13	80	1	68	Myocyte-specific enhancer factor 2A
3mu6_A	5e-17	13	80	1	68	Myocyte-specific enhancer factor 2A
3mu6_B	5e-17	13	80	1	68	Myocyte-specific enhancer factor 2A
3mu6_C	5e-17	13	80	1	68	Myocyte-specific enhancer factor 2A
3mu6_D	5e-17	13	80	1	68	Myocyte-specific enhancer factor 2A
3p57_A	1e-16	13	80	1	68	Myocyte-specific enhancer factor 2A
3p57_B	1e-16	13	80	1	68	Myocyte-specific enhancer factor 2A
3p57_C	1e-16	13	80	1	68	Myocyte-specific enhancer factor 2A
3p57_D	1e-16	13	80	1	68	Myocyte-specific enhancer factor 2A
3p57_I	1e-16	13	80	1	68	Myocyte-specific enhancer factor 2A
3p57_J	1e-16	13	80	1	68	Myocyte-specific enhancer factor 2A

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019198284.1	4e-49	PREDICTED: agamous-like MADS-box protein AGL61
Refseq	XP_019198287.1	3e-49	PREDICTED: agamous-like MADS-box protein AGL61
TrEMBL	A0A484NMH5	1e-40	A0A484NMH5_9ASTE; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA204	24	223

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G24840.1	1e-23	AGAMOUS-like 61