PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc003303.1_g00002.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family ERF
Protein Properties Length: 154aa    MW: 17107.5 Da    PI: 10.4474
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc003303.1_g00002.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP246.59.4e-153078355
                      AP2  3 ykGV..rwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                             ykG+  r +k +g+WvAeIrd      ++r +lg++ t+  Aa+a++ a  +l+g
  Itr_sc003303.1_g00002.1 30 YKGIriRMRK-WGKWVAEIRDT-----NTRLWLGSYYTPVAAARAYDVALFYLRG 78
                             8999777777.**********5.....5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003801.4E-262992IPR001471AP2/ERF domain
PROSITE profilePS5103220.4682986IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.0E-243087IPR001471AP2/ERF domain
CDDcd000181.17E-213087No hitNo description
PfamPF008471.1E-83078IPR001471AP2/ERF domain
PRINTSPR003675.7E-73243IPR001471AP2/ERF domain
SuperFamilySSF541712.29E-163587IPR016177DNA-binding domain
PRINTSPR003675.7E-76888IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 154 aa     Download sequence    Send to blast
MAAGGGDGVG ASRGGGAEKK KRGPKQKNPY KGIRIRMRKW GKWVAEIRDT NTRLWLGSYY  60
TPVAAARAYD VALFYLRGSG AKLNFPDCVV GDGHHRQLMP KEIQNRATAV GYRIDAIQRG  120
LHVSSTQMNV NVVDHRPESD VYVTPDLNKY PHLD
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015071928.15e-43ethylene-responsive transcription factor ERF010
TrEMBLA0A1U8GBU27e-41A0A1U8GBU2_CAPAN; Ethylene-responsive transcription factor RAP2-1
TrEMBLA0A2G2VBV07e-41A0A2G2VBV0_CAPBA; Ethylene-responsive transcription factor RAP2-1
TrEMBLA0A2G2Y0I97e-41A0A2G2Y0I9_CAPAN; ethylene-responsive transcription factor ERF010-like
TrEMBLA0A2G3CPX27e-41A0A2G3CPX2_CAPCH; Ethylene-responsive transcription factor RAP2-1
TrEMBLA0A3Q7H1Z89e-41A0A3Q7H1Z8_SOLLC; Uncharacterized protein
STRINGSolyc04g078640.1.19e-42(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA9432390
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46768.15e-32related to AP2 1