PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc003303.1_g00004.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family ERF
Protein Properties Length: 131aa    MW: 14636.9 Da    PI: 11.0421
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc003303.1_g00004.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP232.22.6e-103262238
                      AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgt 38
                              ykG+r +k +g+WvAeI+d      ++r +lg++ t
  Itr_sc003303.1_g00004.1 32 PYKGIRMRK-WGKWVAEIHDT-----NTRLWLGSYYT 62
                             59*****99.**********5.....5*******965 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.9E-83268IPR016177DNA-binding domain
PROSITE profilePS5103212.7873267IPR001471AP2/ERF domain
SMARTSM003804.4E-53278IPR001471AP2/ERF domain
PRINTSPR003672.1E-63344IPR001471AP2/ERF domain
PfamPF008475.0E-53361IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.4E-133367IPR001471AP2/ERF domain
PRINTSPR003672.1E-65369IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 131 aa     Download sequence    Send to blast
MAAGGGDGVG ASICSRGRGA EKKKRGPKQK NPYKGIRMRK WGKWVAEIHD TNTRLWLGSY  60
YTSGTAAVLP VPTTWPSFTC VARQPSLTSP TTWLAMATTA NSCQRRFRIE PQQLDIGLMQ  120
FRGDYIYRPL R
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50260.13e-13cooperatively regulated by ethylene and jasmonate 1