PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc003319.1_g00001.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

TCP

Protein Properties

Length: 256aa MW: 26594.1 Da PI: 8.997

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc003319.1_g00001.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	111.4	1.3e-34	51	123	4	74
TCP 4 kkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec..e 74 + +++hTkv+gR+RRvR++a+caar+F+L++eLG+ + ++ti+WLl+qa+pai+++tgt++++as++ + Itr_sc003319.1_g00001.1 51 RNAAVKDRHTKVNGRGRRVRMPALCAARIFQLTRELGHRTEGETIQWLLRQAEPAIIAATGTGTTPASAVttT 123 566679********************************************************99999777432 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	1.0E-28	55	120	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	26.955	55	109	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 256 aa Download sequence Send to blast
MGSENVFSGF SVSDSQSPNA LSPTSTPAQT PLYRLVGGAA AADNGEASRG RNAAVKDRHT 60 KVNGRGRRVR MPALCAARIF QLTRELGHRT EGETIQWLLR QAEPAIIAAT GTGTTPASAV 120 TTTPSGAVIA SGPPPSAMAP LAGMSRVLPL PIPSPSVVGA SRYVAAAAPT NRVHQLSVPC 180 LNNGGGRFMQ AAAAAAEMGL FSITRPCCRF DLIQPSSAAA QHDFSGNVPS FTSMLMQTSP 240 TMNEVEGEHY EDVGKH

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019156215.1	1e-133	PREDICTED: transcription factor PCF2
TrEMBL	A0A484MU79	4e-67	A0A484MU79_9ASTE; Uncharacterized protein
STRING	Solyc09g008030.1.1	1e-40	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA248	24	201

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G27010.1	1e-25	TCP family protein