PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc003366.1_g00001.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

WRKY

Protein Properties

Length: 118aa MW: 13119 Da PI: 10.4781

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc003366.1_g00001.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	37.9	3.5e-12	88	109	1	22
---SS-EEEEEEE--TT-SS-E CS WRKY 1 ldDgynWrKYGqKevkgsefpr 22 ldDgy+WrKYGqK vk+++fpr Itr_sc003366.1_g00001.1 88 LDDGYRWRKYGQKAVKNNKFPR 109 59*******************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	3.9E-13	74	109	IPR003657	WRKY domain
SuperFamily	SSF118290	3.01E-10	80	109	IPR003657	WRKY domain
PROSITE profile	PS50811	12.966	83	109	IPR003657	WRKY domain
SMART	SM00774	6.4E-4	88	118	IPR003657	WRKY domain
Pfam	PF03106	2.6E-8	89	110	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 118 aa Download sequence Send to blast
MKNQTALFLG FTPPLAASSE DAKKVVGYPI PKEAKDNNSD NNVGVDEEIS LLLSQKESSG 60 GVVSKKKGEK KTRMPRFAFQ TRSQVDILDD GYRWRKYGQK AVKNNKFPRL VVSTSTLP

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010917544.2	4e-25	probable WRKY transcription factor 75 isoform X1
Refseq	XP_010917545.2	3e-25	probable WRKY transcription factor 12 isoform X2
TrEMBL	A0A2P6R0A5	1e-23	A0A2P6R0A5_ROSCH; Putative transcription factor WRKY family

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2204	24	61

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G13080.1	9e-21	WRKY DNA-binding protein 75