PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc003372.1_g00002.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family WRKY
Protein Properties Length: 352aa    MW: 38425.8 Da    PI: 7.0483
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc003372.1_g00002.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY98.44.5e-31184242259
                              --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                     WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                              +D ++WrKYGqK++kgs++pr+YYrC+++ gC ++k+ver+++dp+++++tY+ eHnh+
  Itr_sc003372.1_g00002.1 184 SDVWSWRKYGQKPIKGSPYPRGYYRCSTSkGCLARKQVERNRSDPSMFIVTYTAEHNHP 242
                              79************************9988****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.5E-31174244IPR003657WRKY domain
PROSITE profilePS5081135.186178244IPR003657WRKY domain
SuperFamilySSF1182901.16E-26181244IPR003657WRKY domain
SMARTSM007743.1E-37183243IPR003657WRKY domain
PfamPF031064.1E-26185242IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 352 aa     Download sequence    Send to blast
MGDDWDLHAV VRGCAAAASS SAATATATTA SPLGSAFQPR QDQDLLCLQD LLEFGAKRNE  60
SRRRFNDDLH DLYRPFFRPP PPPPQPPQPS LQRTQAAPPL SPQNTPISPL SVLGGLPDLS  120
PSHQILKPHI SPAATIIHPK KQPFPVNISS ATTPTTPHTQ SPRSKRRKNQ LKRVCQVPAE  180
ALSSDVWSWR KYGQKPIKGS PYPRGYYRCS TSKGCLARKQ VERNRSDPSM FIVTYTAEHN  240
HPMPTHRNSL AGSTRQKPAA AHQPETSGDT MKSGASPPAP EKQESSRDER EDMFEDEDDE  300
FGVANMAIDS LGPDDDFFEG LEDLGGDCFP DSLPGTTLQF PWLTTTTAAG GG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B4e-22168245280Disease resistance protein RRS1
5w3x_D4e-22168245280Disease resistance protein RRS1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4427478e-44AM442747.2 Vitis vinifera contig VV78X187875.7, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019194785.11e-168PREDICTED: WRKY transcription factor 22-like
TrEMBLA0A328DWS51e-123A0A328DWS5_9ASTE; Uncharacterized protein
STRINGXP_009768958.11e-116(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA25912457
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01250.15e-64WRKY family protein