PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc003409.1_g00003.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family M-type_MADS
Protein Properties Length: 159aa    MW: 17982.6 Da    PI: 5.9398
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc003409.1_g00003.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF23.38e-0813421241
                             HHHHHHHHHHHHHHHHHHHHT-EEEEEEE- CS
                   SRF-TF 12 tfskRrngilKKAeELSvLCdaevaviifs 41
                              f+k +n i+K  + +S+LC+a+v +i fs
  Itr_sc003409.1_g00003.1 13 NFCKEQNAIMKRVSQISTLCAANVVMICFS 42
                             59**************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500669.222154IPR002100Transcription factor, MADS-box
PfamPF003191.8E-6745IPR002100Transcription factor, MADS-box
SuperFamilySSF554556.54E-8958IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 159 aa     Download sequence    Send to blast
MSGSEVTRSQ MENFCKEQNA IMKRVSQIST LCAANVVMIC FSICSQMFVS GDESIIDAFE  60
AETIISPQCT FECTTHKSPG FFKFLKWRNK NNSAFSSSAS SSCRKEKNCV KSPINPPTNI  120
DEFSDKLILP KIEQLEEKME GFKEIMNQQY LFLSAQQNV
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019191276.11e-76PREDICTED: agamous-like MADS-box protein AGL1