PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc003477.1_g00001.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family bHLH
Protein Properties Length: 694aa    MW: 74073.2 Da    PI: 6.2552
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc003477.1_g00001.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH13.30.000154464663555
                              TS-STCHHHHHHHHHHHHHHH CS
                      HLH  35 skKlsKaeiLekAveYIksLq 55 
                              s++ +Ka++L +A+eY+k Lq
  Itr_sc003477.1_g00001.1 446 SERADKASMLDEAIEYLKTLQ 466
                              7899****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.101.3E-4222228IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.3E-4445474IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.07E-6446494IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.26E-4446470No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009704Biological Processde-etiolation
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0010017Biological Processred or far-red light signaling pathway
GO:0031539Biological Processpositive regulation of anthocyanin metabolic process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0042802Molecular Functionidentical protein binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 694 aa     Download sequence    Send to blast
MPLSEFLKML KNESGERKPT SSSADDLSPL PGSDFSELVW ENGQISMQGQ SSKAKKSDNN  60
LSLQASRMRE KCVGNASTSR IGKLDLAGSV LDEMPPSVPS GEMDLSQDDE IAPWLNYSPT  120
NGQSQEYGSQ LLPEISGMTA NDDGFALIDK GVCCNLMVGA SKSVPNHNVV NSGQRNASKV  180
DCSPTPRFGL LASWSSQQAN PLVSGVSDIG SSNGSINLDS ILKDSVPAQA SAGMKIQNQD  240
TETPRTCPTL LNFSNFSRPV VLARANLQNL TSTLEAKGKR EKEIKENTQN PAKTALIEAC  300
STSRKESELK SQPNLVCTKF EPRPTLAKPH GESSPLEQTD ASFREDTNDA DKAHGKLISP  360
AYVGRVLDGD KTVEPGACSS VCSGSSAERA SNDQSHSLKR RTRENEESGC PSEDAEEESA  420
GAKKAAPARG GTGLKRSRAA EVHNLSERAD KASMLDEAIE YLKTLQLQVQ IMSMGAGLCM  480
PQMMFPAGMH HHMHAQMPHF PQMGLGIGMG MGFGMGLPEL SGRSPGCPIY PMPAMPRPHF  540
PSPSMSGPIN FPGMAAASNI QAFGHPCQGV SMPVPRTPFV PLSQQPSASS APGLNASKMR  600
MNGEVPSKST MLPPEDPEKI KNLQLTQNSD PIPSRLKNQT SQVQTTRDQQ PNASDDPTVN  660
PTNSTNVPGS KAADGLCCAQ RNEIAFIRKG DLAE
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00081ChIP-seqTransfer from AT1G09530Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019170373.10.0PREDICTED: transcription factor PIF3-like isoform X2
TrEMBLA0A2G3BUP71e-167A0A2G3BUP7_CAPCH; Transcription factor PIF3 (Fragment)
STRINGPGSC0003DMT4000470791e-162(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA49652437
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09530.23e-31phytochrome interacting factor 3