PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc003485.1_g00001.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

bHLH

Protein Properties

Length: 693aa MW: 74089.8 Da PI: 6.0133

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc003485.1_g00001.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	13.6	0.00012	445	465	35	55
TS-STCHHHHHHHHHHHHHHH CS HLH 35 skKlsKaeiLekAveYIksLq 55 s++ +Ka++L +A+eY+k Lq Itr_sc003485.1_g00001.1 445 SERTDKASMLDEAIEYLKTLQ 465 7899****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.280.10	4.0E-5	217	223	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	4.19E-6	443	483	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	4.0E-5	444	473	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	3.36E-4	445	469	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 693 aa Download sequence Send to blast
MPLSEFLKLH NLEFGEPKTA SSSPDLSSFF ENEVVELVWE NGQIVMQGQS SRAKRSPTSN 60 NLSSSQMPVI RDKPKENPST PRIGGKAFLM DEMPLSVPTN EVDLSQDDEI VPWLNYSLNN 120 NSLQYEYSSG VVPEASGLTA NELPAQNNFA SMDKTGGSNP MAVNNSSQRN AAKLDSSRFG 180 MFPSWSYKAQ HPSVPSLGSG ASDIGISNAS NNLDSILRDS VPGQASVDTK MQKQETSIPG 240 RGPPGLLNFS HFSRPVAHTR ANTGNIAGSP AIESKENKEK ELSANCRNPV NPAPVETCST 300 SKREIARHNQ PDLQCFKIDH RPATAKTHDA SFPLEEPNTS LREDMKENNN NQYGQPIDPV 360 VNKGVLGGDK AVEPGAVCSS VCSGSSPERT SNDQSNSLKR KYCDHESGCQ SEDIEEESLD 420 ARKAAPVRGG TGSKRSRAAE VHNLSERTDK ASMLDEAIEY LKTLQFQVQI MSMGAGFCVP 480 PIIYPAGMHA TQMPHFPPMG LGMGMGVGMG MGMGMGFGMG IQEMNGRSPG CPLFPISPMQ 540 RVQLSSPPFS GPSTFPGIAA SNFPVFGHPG LGIPISIPKP PTISKSGQPA RSSPVGMGAS 600 RTGIQVEVPC TSATLKPEDL VKTKSSQLMN NTDPNRSINQ TSSQPAWVQN GDQLLHDCDS 660 PAVNFTSSTG SEAGHSTGAI MHIGQTSETT LKD

Sequence ? help Back to Top

Protein Sequence Length: 693 aa Download sequence Send to blast

MPLSEFLKLH NLEFGEPKTA SSSPDLSSFF ENEVVELVWE NGQIVMQGQS SRAKRSPTSN  60
NLSSSQMPVI RDKPKENPST PRIGGKAFLM DEMPLSVPTN EVDLSQDDEI VPWLNYSLNN  120
NSLQYEYSSG VVPEASGLTA NELPAQNNFA SMDKTGGSNP MAVNNSSQRN AAKLDSSRFG  180
MFPSWSYKAQ HPSVPSLGSG ASDIGISNAS NNLDSILRDS VPGQASVDTK MQKQETSIPG  240
RGPPGLLNFS HFSRPVAHTR ANTGNIAGSP AIESKENKEK ELSANCRNPV NPAPVETCST  300
SKREIARHNQ PDLQCFKIDH RPATAKTHDA SFPLEEPNTS LREDMKENNN NQYGQPIDPV  360
VNKGVLGGDK AVEPGAVCSS VCSGSSPERT SNDQSNSLKR KYCDHESGCQ SEDIEEESLD  420
ARKAAPVRGG TGSKRSRAAE VHNLSERTDK ASMLDEAIEY LKTLQFQVQI MSMGAGFCVP  480
PIIYPAGMHA TQMPHFPPMG LGMGMGVGMG MGMGMGFGMG IQEMNGRSPG CPLFPISPMQ  540
RVQLSSPPFS GPSTFPGIAA SNFPVFGHPG LGIPISIPKP PTISKSGQPA RSSPVGMGAS  600
RTGIQVEVPC TSATLKPEDL VKTKSSQLMN NTDPNRSINQ TSSQPAWVQN GDQLLHDCDS  660
PAVNFTSSTG SEAGHSTGAI MHIGQTSETT LKD

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019179350.1	0.0	PREDICTED: transcription factor PIF3-like isoform X1
TrEMBL	A0A1S4A984	1e-150	A0A1S4A984_TOBAC; transcription factor PIF3-like isoform X3

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4965	24	37

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G09530.2	1e-27	phytochrome interacting factor 3