PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc003524.1_g00002.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

MYB_related

Protein Properties

Length: 238aa MW: 25293.1 Da PI: 9.991

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc003524.1_g00002.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	26.6	1.4e-08	82	117	12	47
HHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 12 lvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++ + +++G+g+W++I+r + +Rt+ q+ s+ qky Itr_sc003524.1_g00002.1 82 FLLGLEKYGKGDWRSISRNFVVTRTPTQVASHAQKY 117 777899*****************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00167	4.87E-6	79	118	No hit	No description
Pfam	PF00249	1.2E-6	80	117	IPR001005	SANT/Myb domain
TIGRFAMs	TIGR01557	2.2E-11	80	120	IPR006447	Myb domain, plants
SuperFamily	SSF46689	4.4E-10	80	123	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	4.6E-6	82	116	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 238 aa Download sequence Send to blast
MDSAWVKEVG VILTKMARDP RNHKVTSLNP CTPLSLSQST MGNLDLIYFL VVLCWLGSQG 60 EWYKCMNVVV EVEIPKLVDL FFLLGLEKYG KGDWRSISRN FVVTRTPTQV ASHAQKYFIR 120 LNSMNKDRRR SSIHDITNVN SGDVSVGQGP ITGQTNGSAA AAGGGSSGKS NKPQAVAPAP 180 AGVAMYGGAT TIGQPVGVPL VPAVGTPMNL PPQAHMAYGT PSIPGAVVPG MPHTSVHR

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that coordinates abscisic acid (ABA) biosynthesis and signaling-related genes via binding to the specific promoter motif 5'-(A/T)AACCAT-3'. Represses ABA-mediated salt (e.g. NaCl and KCl) stress tolerance. Regulates leaf shape and promotes vegetative growth. {ECO:0000269\|PubMed:26243618}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by salicylic acid (SA) and gibberellic acid (GA) (PubMed:16463103). Triggered by dehydration and salt stress (PubMed:26243618). {ECO:0000269\|PubMed:16463103, ECO:0000269\|PubMed:26243618}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019163229.1	2e-91	PREDICTED: transcription factor DIVARICATA
Refseq	XP_019163230.1	2e-91	PREDICTED: transcription factor DIVARICATA
Refseq	XP_019163231.1	2e-91	PREDICTED: transcription factor DIVARICATA
Refseq	XP_019163232.1	2e-91	PREDICTED: transcription factor DIVARICATA
Swissprot	Q9FNN6	1e-54	SRM1_ARATH; Transcription factor SRM1
TrEMBL	A0A068VFI4	1e-73	A0A068VFI4_COFCA; Uncharacterized protein
STRING	XP_009613368.1	2e-69	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5801	21	36

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G08520.1	8e-50	MYB family protein

Publications ? help Back to Top
Wang T, et al. Salt-Related MYB1 Coordinates Abscisic Acid Biosynthesis and Signaling during Salt Stress in Arabidopsis. Plant Physiol., 2015. 169(2): p. 1027-41 [PMID:26243618] Chen YS, et al. Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis. Plant Mol. Biol., 2017. 93(3): p. 299-311 [PMID:27866313]