PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc003587.1_g00001.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

NAC

Protein Properties

Length: 293aa MW: 34194.2 Da PI: 4.7293

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc003587.1_g00001.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	174.5	3e-54	52	179	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWk 84 lppGfrFhPtdeelv++yLk+k++g ++el ++i+evd+yk+ePw+L k + +++ ewyfF +rd+ky++g r+nrat++gyWk Itr_sc003587.1_g00001.1 52 LPPGFRFHPTDEELVNYYLKRKIHGLEIEL-DIIPEVDLYKCEPWELAeKsFLPSRDPEWYFFGPRDRKYPNGFRTNRATRAGYWK 136 79**************************.99**********84335556888************************ PP NAM 85 atgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 +tgkd++v s +++++g+kktLv+y+grap+g +tdWvmheyrl Itr_sc003587.1_g00001.1 137 STGKDRRVSS-QNRAIGMKKTLVYYRGRAPQGIRTDWVMHEYRL 179 *****9.8999*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.31E-62	47	204	IPR003441	NAC domain
PROSITE profile	PS51005	59.783	52	204	IPR003441	NAC domain
Pfam	PF02365	1.0E-29	53	179	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 293 aa Download sequence Send to blast
MIAEIKGCYS ERERERKRWW GGGPAVYFAA GWPGRREIER EKERERMAPV GLPPGFRFHP 60 TDEELVNYYL KRKIHGLEIE LDIIPEVDLY KCEPWELAEK SFLPSRDPEW YFFGPRDRKY 120 PNGFRTNRAT RAGYWKSTGK DRRVSSQNRA IGMKKTLVYY RGRAPQGIRT DWVMHEYRLD 180 DKECDDSSAG IQVDSYALCR VFKKNGICSE IEEQATQPSC NIQILDYSSA QTVANDQYET 240 PSPEVPFTSS SCVEEEEKED KDDSWMQFIT EDAWCSFTSP YATEECTDDI LDL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	5e-56	42	204	5	168	Stress-induced transcription factor NAC1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor directing sieve element enucleation and cytosol degradation. Not required for formation of lytic vacuoles. Regulates, with NAC045, the transcription of NEN1, NEN2, NEN3, NEN4, RTM1, RTM2, UBP16, PLDZETA, ABCB10 and At1g26450. {ECO:0000269\|PubMed:25081480}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00363	DAP	Transfer from AT3G17730	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019167275.1	1e-162	PREDICTED: NAC domain-containing protein 86 isoform X1
Swissprot	Q9FFI5	6e-89	NAC86_ARATH; NAC domain-containing protein 86
TrEMBL	A0A314KSR4	1e-142	A0A314KSR4_NICAT; Nac domain-containing protein 86
STRING	XP_009790484.1	1e-140	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4621	24	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G17730.1	1e-121	NAC domain containing protein 57

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]