PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc003610.1_g00003.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family C2H2
Protein Properties Length: 143aa    MW: 15820 Da    PI: 10.0431
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc003610.1_g00003.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.30.000523253223
                             EETTTTEEESSHHHHHHHHHHT CS
                  zf-C2H2  2 kCpdCgksFsrksnLkrHirtH 23
                             +C  C++++s++  L  H +tH
  Itr_sc003610.1_g00003.1 32 VCRVCDQVCSNSVGLLLHYQTH 53
                             7*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE patternPS0002803353IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 143 aa     Download sequence    Send to blast
MSNGGSGQTF NSAPPGGKST NEFNYLDWRP IVCRVCDQVC SNSVGLLLHY QTHQVDGTTS  60
FTNHNGRSIP IAQSATNRPG NPNQPTLMPQ IPQNQICHSM LHRNVPNPQF SVPVTKPLVK  120
KVEKPIEEVV ISLTAKKKMT RWT