PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc003675.1_g00001.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family HD-ZIP
Protein Properties Length: 232aa    MW: 26574.7 Da    PI: 6.1766
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc003675.1_g00001.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox61.71.1e-193082456
                             -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                 Homeobox  4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                             + ++++eq+++Le++Fe +r ++ e++ ++A+++gL+ rqV +WFqNrRa++k
  Itr_sc003675.1_g00001.1 30 KKRLSAEQVKALEKVFEADRQLDPERKVKIAQETGLQPRQVAIWFQNRRARHK 82
                             45699**********************************************99 PP
2HD-ZIP_I/II117.76.6e-3829119292
              HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeL 87 
                              kk+rls+eqvk+LE+ Fe++++L+perKv++a+e glqprqva+WFqnrRAR+ktkq+E+dy+ Lk++y+al+ + +++e+e++ L
  Itr_sc003675.1_g00001.1  29 KKKRLSAEQVKALEKVFEADRQLDPERKVKIAQETGLQPRQVAIWFQNRRARHKTKQMERDYTLLKANYEALHLNYTKVEQEKQGL 114
                              9************************************************************************************* PP

              HD-ZIP_I/II  88 reelk 92 
                               +elk
  Itr_sc003675.1_g00001.1 115 IAELK 119
                              99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007117.2162484IPR001356Homeobox domain
SuperFamilySSF466896.27E-192686IPR009057Homeodomain-like
SMARTSM003894.1E-192688IPR001356Homeobox domain
CDDcd000866.37E-182985No hitNo description
PfamPF000466.1E-173082IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.3E-193190IPR009057Homeodomain-like
PRINTSPR000319.8E-55564IPR000047Helix-turn-helix motif
PROSITE patternPS0002705982IPR017970Homeobox, conserved site
PRINTSPR000319.8E-56480IPR000047Helix-turn-helix motif
PfamPF021832.5E-1484124IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
MKDNLVYKKG EFMGGMLEYE ESMEEMNVKK KRLSAEQVKA LEKVFEADRQ LDPERKVKIA  60
QETGLQPRQV AIWFQNRRAR HKTKQMERDY TLLKANYEAL HLNYTKVEQE KQGLIAELKG  120
LKQKIGEENT AGLHHSAKEP TINLGSQNQE HRTANYAAAY KTSQLSPDSD SSGVLNNNED  180
CSLNNLQLMH KISTVHQRSD FTNVEDRSGG LGCTEDSCNI FSVDEAPDEF YW
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17684RRARHKTKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated in leaves by drought stress. {ECO:0000269|PubMed:17999151}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019190286.11e-153PREDICTED: homeobox-leucine zipper protein ATHB-5-like
SwissprotA2YWC09e-40HOX20_ORYSI; Homeobox-leucine zipper protein HOX20
SwissprotQ6Z2489e-40HOX20_ORYSJ; Homeobox-leucine zipper protein HOX20
TrEMBLA0A068TYI62e-60A0A068TYI6_COFCA; Uncharacterized protein
STRINGPGSC0003DMT4000792301e-51(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA129391620
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65310.22e-38homeobox protein 5
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]