PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc003704.1_g00002.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family WRKY
Protein Properties Length: 130aa    MW: 14357.1 Da    PI: 7.18
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc003704.1_g00002.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY322.4e-1094114121
                              ---SS-EEEEEEE--TT-SS- CS
                     WRKY   1 ldDgynWrKYGqKevkgsefp 21 
                              ldDgy+WrKYG+K+vk+s++p
  Itr_sc003704.1_g00002.1  94 LDDGYKWRKYGKKMVKNSPNP 114
                              59*****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.5E-1181114IPR003657WRKY domain
SuperFamilySSF1182901.44E-887114IPR003657WRKY domain
PROSITE profilePS5081112.54189114IPR003657WRKY domain
SMARTSM007740.003794122IPR003657WRKY domain
PfamPF031064.7E-695114IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 130 aa     Download sequence    Send to blast
MDGNYQNMGS PHQPVFEPSE FLELGDWAEE EPAAMHVSGG HYYPLLNPPH HQVPPPPEGV  60
HGGYLQGGPR NNGGSYGGGR EKFAFKTKSE VEILDDGYKW RKYGKKMVKN SPNPSPPLTV  120
AILFPLNSKK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019190518.13e-56PREDICTED: probable WRKY transcription factor 50
TrEMBLA0A484NAZ71e-23A0A484NAZ7_9ASTE; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21242462
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26170.12e-15WRKY DNA-binding protein 50