PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc003765.1_g00001.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family bHLH
Protein Properties Length: 191aa    MW: 21567.8 Da    PI: 9.3858
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc003765.1_g00001.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH11.80.000462193754
                             -STCHHHHHHHHHHHHHH CS
                      HLH 37 KlsKaeiLekAveYIksL 54
                             K++ a+iL  A+eYI++L
  Itr_sc003765.1_g00001.1  2 KNDRASILGDAIEYINEL 19
                             8999************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.107.6E-5231IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 191 aa     Download sequence    Send to blast
MKNDRASILG DAIEYINELK STASKLKDLV EKKRCSCRER IKRPSRRQKT TTENDVKFEP  60
EDMLQCCNGV SLSSSSSWHR RKSKNNNTEV DVRIVEDEVT VKLIVLQKKK KKGTNCLLLV  120
SKLLDELQLH LYHVAGGLIG DYYSFLFNSK IFQGTTVYAS DIANTLVEAM EKHVVQYTAA  180
IAPPALQLST S
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022896498.13e-59transcription factor bHLH91-like
SwissprotQ8GX462e-45BH091_ARATH; Transcription factor bHLH91
TrEMBLA0A328EBV41e-55A0A328EBV4_9ASTE; Uncharacterized protein
TrEMBLA0A484LHQ31e-55A0A484LHQ3_9ASTE; Uncharacterized protein
TrEMBLA0A484NLL41e-55A0A484NLL4_9ASTE; Uncharacterized protein
STRINGMigut.N01685.1.p4e-55(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA26962351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31210.19e-44bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Cui J, et al.
    Feedback Regulation of DYT1 by Interactions with Downstream bHLH Factors Promotes DYT1 Nuclear Localization and Anther Development.
    Plant Cell, 2016. 28(5): p. 1078-93
    [PMID:27113773]
  3. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]