PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc003973.1_g00002.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family bHLH
Protein Properties Length: 246aa    MW: 26797.8 Da    PI: 4.4162
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc003973.1_g00002.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH13.40.000153277554
                             HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                      HLH  5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                             + erEr  R+++N+ f  L   l  +     + + Ka+iL ++v+ +k+L
  Itr_sc003973.1_g00002.1 32 KAERERLKREHLNDLFLSLANALELS----EQANGKATILNETVRSVKDL 77
                             579********************998....68899*********988876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.1372777IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.89E-43082No hitNo description
SuperFamilySSF474598.9E-103091IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.1E-73397IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010106Biological Processcellular response to iron ion starvation
GO:0055072Biological Processiron ion homeostasis
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    Send to blast
MTSPNMDSEG QATPVGKNGS TPSEMPQNGV HKAERERLKR EHLNDLFLSL ANALELSEQA  60
NGKATILNET VRSVKDLLGQ IEHLKKENAA LLSESEYMSV ETKELEDENS VLEAEISNLQ  120
SKLLSQINEI KERTSGSNLD LNLAPPECEE EALPSNVAPD YFSVPANEPA SQTAQTMMNP  180
VYIYPFRPDP RAYPAPGAPA LDSPALPVST VSKPLARYPT PTDTWSSQIL GKRPRLENET  240
QGGGSS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019152920.11e-144PREDICTED: transcription factor bHLH47-like
TrEMBLM0ZIT33e-76M0ZIT3_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000016174e-77(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA43071934
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G47640.31e-45bHLH family protein