PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc004042.1_g00002.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

FAR1

Protein Properties

Length: 224aa MW: 26051.5 Da PI: 9.1236

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc004042.1_g00002.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	33.3	1.6e-10	34	76	49	91
FAR1 49 ekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 +++ + tr +C+a+ + +++++gkw+vtk ++eHnHel+p Itr_sc004042.1_g00002.1 34 VNKCYAKIDTRSECNAMCQFNLDSSGKWVVTKHVKEHNHELCP 76 356678899********************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	9.4E-8	35	76	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	4.5E-21	110	183	IPR018289	MULE transposase domain

Sequence ? help Back to Top
Protein Sequence Length: 224 aa Download sequence Send to blast
MVVILLLEVV VLLQMPMRRI HLFQAGFKAK PESVNKCYAK IDTRSECNAM CQFNLDSSGK 60 WVVTKHVKEH NHELCPPSAS YMLRSHRNVS VAQLTYLKDM KRSGVPLSDG MNHHCMNVMF 120 GCGFLLNERT ESFVWLFKTF LQSMDGRQPQ TIMTYQCSVM AVAIMQVFPN SRHRLCIWHI 180 GENSKKHIIK GLRIQKGFIE LFNFLLKSSD TEAEFEFYWN SMQF

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019157252.1	2e-66	PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
Refseq	XP_019165721.1	3e-66	PREDICTED: protein FAR1-RELATED SEQUENCE 4-like
TrEMBL	A0A484MES8	8e-41	A0A484MES8_9ASTE; Uncharacterized protein
STRING	XP_010669163.1	9e-42	(Beta vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA14143	2	11

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G15090.1	6e-22	FAR1 family protein