PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc004061.1_g00002.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family Dof
Protein Properties Length: 266aa    MW: 28521.4 Da    PI: 7.343
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc004061.1_g00002.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof123.47.6e-393089362
                   zf-Dof  3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62
                             +++lkcprCds ntkfCyynny+lsqPr+fCk+CrryWtkGG lrnvPvGgg+rk k+s+
  Itr_sc004061.1_g00002.1 30 TAELKCPRCDSLNTKFCYYNNYNLSQPRHFCKSCRRYWTKGGVLRNVPVGGGSRKTKRSK 89
                             5689****************************************************9976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074783.0E-262787IPR003851Zinc finger, Dof-type
PfamPF027011.4E-333287IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.4323387IPR003851Zinc finger, Dof-type
PROSITE patternPS0136103571IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 266 aa     Download sequence    Send to blast
MQDVHPIGGG GARMFAGGGD RRLRPHHHQT AELKCPRCDS LNTKFCYYNN YNLSQPRHFC  60
KSCRRYWTKG GVLRNVPVGG GSRKTKRSKH KSAESSQRPP ESNSHSSSES SSVTAAAAAA  120
AATVGAAEVV AESANDQPLM DHSTDGQIFQ ELGNFTTLMT SSDGPSSLVE FTNAAAAAAA  180
DTFRLPHSPK AQWGPQPKMD GEDGKMQDIT AAGFLDDATQ SRRSNGGLSP LDWQIGGGQG  240
HGLFDLTGAV DQSYWNDDHT LNYLPL
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ8572542e-50DQ857254.1 Glycine max Dof4 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019189648.11e-148PREDICTED: dof zinc finger protein DOF5.4-like
TrEMBLF6GTE91e-67F6GTE9_VITVI; Uncharacterized protein
STRINGVIT_17s0000g04850.t012e-68(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8824419
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60850.11e-36OBF binding protein 4