PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc004082.1_g00001.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family GATA
Protein Properties Length: 528aa    MW: 58231.5 Da    PI: 7.0416
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc004082.1_g00001.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA50.13.8e-16741135
                     GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                             C +Cg+t+TplWR+gp  ++ LCnaCG ++r kg+
  Itr_sc004082.1_g00001.1  7 CYHCGVTNTPLWRNGPPEKPVLCNACGSRWRTKGT 41
                             ****************88888***********997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004014.4E-10155IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.19E-11545No hitNo description
CDDcd002029.64E-17655No hitNo description
PfamPF003205.1E-14741IPR000679Zinc finger, GATA-type
PROSITE patternPS003440732IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.103.3E-12741IPR013088Zinc finger, NHR/GATA-type
PROSITE profilePS5011411.095740IPR000679Zinc finger, GATA-type
PfamPF139192.5E-8285375IPR028020ASX homology domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 528 aa     Download sequence    Send to blast
MGKQGPCYHC GVTNTPLWRN GPPEKPVLCN ACGSRWRTKG TLANYTPLHA RAEPGDFEDY  60
RGSKVKSTPI RIKEAKVLKR KHIYDYAEVG VPPDYSQVLS KGLDEDTSNR SSSGSAVSNS  120
ESCAQFAGTE LSDLTGPTQP NIWDTMVPSK KRTCVGRPKP SPVEKLTKDL CTILHEQQSS  180
YFSGSSEEDL LFESDKPMVS VEIGHGSMLI RHPSSIGREE ESEASSLSVD NKQNPVNEAY  240
SPWPTPSVHI NNKVFNSPSM GTESIKKPTG HGMDQELVKR DKDRLEKLQM LGHHNSPLCY  300
VDLKDIVNFD EFTSKLTTDE QQQLLKCLPS VDTSAPPDSF RGMFESAQFK ENLSCFQKLL  360
AEGVLDNSLS GVKIEDCRTL KRFAMCYLTK SKWVEQYNLL KDVKCKNSSS GFGVAGLPND  420
VGIGHSVNIK RSLDGQNQKI SATTVMKSPK RVVSKGSYEN RENDGSFFSP KCLFALPPYS  480
SSPALESSDD QDLLLDVPSN SSFPQAELLL PSRFDAQAST NSSSVFLK
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019190952.10.0PREDICTED: GATA transcription factor 26-like isoform X3
SwissprotQ8W4H11e-144GAT26_ARATH; GATA transcription factor 26
TrEMBLA0A328DK400.0A0A328DK40_9ASTE; Uncharacterized protein
TrEMBLA0A484L2H00.0A0A484L2H0_9ASTE; Uncharacterized protein
STRINGXP_009772103.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20892462
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17570.31e-144GATA transcription factor 26