PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc004102.1_g00001.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family bHLH
Protein Properties Length: 288aa    MW: 32197.8 Da    PI: 7.6998
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc004102.1_g00001.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.66.1e-1099146455
                              HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                      HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                              +h+ +Er RR++i +++  L+ l+P +    +k   Ka iL + ++Y++sLq
  Itr_sc004102.1_g00001.1  99 SHSLAERVRREKISERMKVLQALVPGC----DKVTGKALILDEIINYVQSLQ 146
                              8*************************9....555*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.98E-1093150No hitNo description
SuperFamilySSF474597.59E-1693153IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.9E-1695153IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.7795145IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.6E-799146IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.0E-11101151IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MGEEMMMKMI KPTPMEKKRK SRKASSFSQS KGTVKESDKG KRKRERMNNN GDEDKELEPI  60
LLSEKMKDEK KIKGVDEEEA PVGVGYIHVR ARRGQATDSH SLAERVRREK ISERMKVLQA  120
LVPGCDKVTG KALILDEIIN YVQSLQNQVE TSRSMAANPT AATSTMEAAA VVAFLSMKLA  180
SENPMFYDGG LDILHAPAPA GINMEQGEQE QWNPTMRSST EIGAVLSETK SDLTLMPTTI  240
ANCDYQFQFI ATPTSLHYQH PHFLNPIPIN QGNGQLLWDL GEQRPKIH
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019154102.11e-128PREDICTED: transcription factor bHLH137-like isoform X3
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA41162345
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50915.23e-42bHLH family protein