PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc004231.1_g00004.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

Nin-like

Protein Properties

Length: 224aa MW: 26041.4 Da PI: 10.2555

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc004231.1_g00004.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	57.1	3.6e-18	60	108	4	52
RWP-RK 4 eisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 +is +ls yF++pi +AAkeL v +LK +C ++GI RWPhR++ sl Itr_sc004231.1_g00004.1 60 TISKAMLSTYFHMPIYKAAKELRVEYRILKTRCEELGIFRWPHRQLVSL 108 79999****************************************9886 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	15.118	41	130	IPR003035	RWP-RK domain
Pfam	PF02042	1.2E-15	60	108	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 224 aa Download sequence Send to blast
MDGVLLPSAS VIPIEWDITP TSNAVAVKQD TTTGTKESMI EKIVRRQSKR TKITFRDPST 60 ISKAMLSTYF HMPIYKAAKE LRVEYRILKT RCEELGIFRW PHRQLVSLQK LFENVKELGS 120 IEDDPELREV LKEIKDRREM MLRNPHLKLH PAEIKLRDAC TRKKSCVERK LQLHGTEAIH 180 PFNTTAYSLG HILLIAPRQM EVFRNHFKIP KSFGWSGIIP YNYG

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4274	21	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G18790.1	1e-24	RWP-RK domain-containing protein