PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc004336.1_g00001.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family M-type_MADS
Protein Properties Length: 179aa    MW: 19835.4 Da    PI: 6.9456
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc004336.1_g00001.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF22.12e-07350249
                             ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
                   SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                              ie +  r+vtfskR+  ++  A+     ++a +a+ ++ss+g ++ +
  Itr_sc004336.1_g00001.1  3 LIECENARSVTFSKRKIILFENAKRAAASTGATIAIFLISSKGYMHAF 50
                             5788899**************************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006613.049154IPR002100Transcription factor, MADS-box
SuperFamilySSF554556.8E-9170IPR002100Transcription factor, MADS-box
PfamPF003199.3E-8450IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 179 aa     Download sequence    Send to blast
MKLIECENAR SVTFSKRKII LFENAKRAAA STGATIAIFL ISSKGYMHAF GTSCVHPIIN  60
EYRARHSNDN VAIAVAQNDG HRLDLLNGDP VDKLKQILEC QDVSFLLGPN FDRSNLEHVI  120
AAYSWFVHMI SVASHVRRFN LNVTPAAYDD KEAEEEETAC ANPTRGFNLN AAPTSHGYV
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019160724.12e-75PREDICTED: MADS-box protein FLOWERING LOCUS C-like
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36590.11e-08M-type_MADS family protein