 |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | Itr_sc004364.1_g00004.1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
|
||||||||
| Family | FAR1 | ||||||||
| Protein Properties | Length: 156aa MW: 17839.4 Da PI: 9.9509 | ||||||||
| Description | FAR1 family protein | ||||||||
| Gene Model |
|
||||||||
| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | FAR1 | 34.9 | 5e-11 | 20 | 62 | 49 | 91 |
FAR1 49 ekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91
++ ++ tr gC+a+ + ++++gkw+vtk ++eHnHel+p
Itr_sc004364.1_g00004.1 20 ANKCYSKIDTRSGCNAMCQFDLDSSGKWVVTKHVKEHNHELCP 62
345668899********************************97 PP
| |||||||
| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| Pfam | PF03101 | 2.2E-8 | 20 | 62 | IPR004330 | FAR1 DNA binding domain |
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 156 aa Download sequence Send to blast |
MPLRRIHLLQ ARFKAKPESA NKCYSKIDTR SGCNAMCQFD LDSSGKWVVT KHVKEHNHEL 60 CPPSASYMLR SHRNVSVDQL TYLKDMKRSG VPLSDGIRFL KHQSGGSPFV GFTARDAYNT 120 MLLDSAKHLD GTDSNTLIEI FRKRQLNESD FFLFRS |
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_019166533.1 | 8e-75 | PREDICTED: protein FAR1-RELATED SEQUENCE 5-like | ||||
| Refseq | XP_019180288.1 | 7e-75 | PREDICTED: protein FAR1-RELATED SEQUENCE 7-like | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Asterids | OGEA14143 | 2 | 11 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT4G38180.1 | 2e-18 | FAR1-related sequence 5 | ||||
| ©2010-2022, Center
for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
Supported By
|