PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc004392.1_g00001.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family ZF-HD
Protein Properties Length: 87aa    MW: 9319.38 Da    PI: 9.1025
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc004392.1_g00001.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer107.38.7e-342582260
              ZF-HD_dimer  2 ekvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreveee 60
                             ++vrY eC++NhAa++Gg+avDGC+Efmps g +gtaaal+CaACgCHRnFHRr+v++e
  Itr_sc004392.1_g00001.1 25 TSVRYAECQRNHAANIGGYAVDGCREFMPS-GGDGTAAALTCAACGCHRNFHRRDVQSE 82
                             579**************************9.8899*******************99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257744.0E-14183IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047704.9E-312779IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015664.3E-272878IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152325.8372978IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Sequence ? help Back to Top
Protein Sequence    Length: 87 aa     Download sequence    Send to blast
MKKRQVVVRK DLTRRNTGGV SGATTSVRYA ECQRNHAANI GGYAVDGCRE FMPSGGDGTA  60
AALTCAACGC HRNFHRRDVQ SEVSESS
Functional Description ? help Back to Top
Source Description
UniProtInhibits zinc finger homeodomain (ZHD) transcription factors by interacting with them to prevent both their nuclear localization and their DNA-binding properties. Involved in integrating signals from multiple hormones by regulating the expression of specific genes. Promotes the formation of ectopic shoot meristems on leaf margins. {ECO:0000269|PubMed:21455630}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009800036.15e-39PREDICTED: mini zinc finger protein 3-like
RefseqXP_019244748.15e-39PREDICTED: mini zinc finger protein 3-like
SwissprotQ2Q4933e-32MIF3_ARATH; Mini zinc finger protein 3
TrEMBLA0A484KBD26e-50A0A484KBD2_9ASTE; Uncharacterized protein
STRINGXP_009800036.12e-38(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA11052486
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G18835.12e-22mini zinc finger