PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc004397.1_g00004.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

Dof

Protein Properties

Length: 225aa MW: 25459.4 Da PI: 9.6216

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc004397.1_g00004.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	95.3	4.5e-30	31	88	4	61
zf-Dof 4 kalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 + ++cprC+s++tkfCy+nny+++qPry+C+aC+r+Wt GG r++P+Gg + k +ks Itr_sc004397.1_g00004.1 31 SPRQCPRCHSDDTKFCYFNNYNMNQPRYYCRACKRHWTLGGIQRDIPIGGKSNKGRKS 88 6789**********************************************99998876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	4.0E-16	15	80	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	2.3E-27	32	87	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	25.099	33	87	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	35	71	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 225 aa Download sequence Send to blast
MEQGNGVGDY HPSLSSVRRL RMMEYPNSPP SPRQCPRCHS DDTKFCYFNN YNMNQPRYYC 60 RACKRHWTLG GIQRDIPIGG KSNKGRKSTK RYENKRVQPS LPQLQPPCPQ ANVAPLAFGP 120 LALPPMVTPY RVENGYLNMV NPLRTIESPY NSSQNAFQPT WHYDSRSHNN LFLNNNDGAS 180 SSNSIPLNAS VKNNTTSGYT NIGWGSLIAN PNDWLDFPRS FDPST

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019164591.1	1e-118	PREDICTED: dof zinc finger protein DOF4.5-like

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA88	24	419

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G45610.1	7e-23	Dof family protein