PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc004413.1_g00003.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family C2H2
Protein Properties Length: 155aa    MW: 16656.7 Da    PI: 7.7295
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc004413.1_g00003.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.51.2e-052446123
                             EEETTTTEEESSHHHHHHHHHHT CS
                  zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                             + C+ C + F+r+  L  H+r+H
  Itr_sc004413.1_g00003.1 24 HICTVCERLFNRRQALLGHMRLH 46
                             68*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.69E-62150No hitNo description
Gene3DG3DSA:3.30.160.601.1E-42248IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.2812451IPR007087Zinc finger, C2H2
SMARTSM003550.00632446IPR015880Zinc finger, C2H2-like
PfamPF139126.9E-62446IPR007087Zinc finger, C2H2
PROSITE patternPS0002802646IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 155 aa     Download sequence    Send to blast
MSRNNANGSS SFNSFPPAQP QQNHICTVCE RLFNRRQALL GHMRLHVGGQ DAATPPPPIA  60
APPPLANNAP LAQLEAPVEL PDLNEPQHAR TFHFNRSTTK DVTVAERCDD VVAVRCCGGR  120
GGAVRCDDAV AVAGSGCSCS VRWWWGDLAF AREKG