PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc004421.1_g00001.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

WRKY

Protein Properties

Length: 246aa MW: 27147.8 Da PI: 6.1703

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc004421.1_g00001.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	93.8	1.3e-29	70	128	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 D ++WrKYGqK++kgs++pr+YYrC+s+ gCp++k+ve+s+ dp+v+ +tY eHnh+ Itr_sc004421.1_g00001.1 70 ADSWAWRKYGQKPIKGSPHPRGYYRCSSSkGCPARKQVEKSRADPNVLLVTYFCEHNHS 128 69***********************998**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	1.6E-30	65	130	IPR003657	WRKY domain
SuperFamily	SSF118290	1.57E-25	68	130	IPR003657	WRKY domain
SMART	SM00774	1.5E-35	69	129	IPR003657	WRKY domain
PROSITE profile	PS50811	30.653	71	130	IPR003657	WRKY domain
Pfam	PF03106	3.4E-25	71	127	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 246 aa Download sequence Send to blast
MVGRFDQTHP SPPDQDDSDT SPENSADSPV SGADHDTKIT KVSFPKRRKS AQKRVTSVTI 60 NDGEISIPPA DSWAWRKYGQ KPIKGSPHPR GYYRCSSSKG CPARKQVEKS RADPNVLLVT 120 YFCEHNHSRP AARNAAAAVS DDSKRPRATN DHSSQSEGDS EERVAAKCHE SPLAAGNEAD 180 WFLNFEPATS FAILDESPMM TQTKVTDADD APPPVFSSRV EDESLFADLG ELPEFSRGFR 240 RVWGER

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5w3x_B	2e-20	65	131	9	80	Disease resistance protein RRS1
5w3x_D	2e-20	65	131	9	80	Disease resistance protein RRS1
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019166649.1	1e-147	PREDICTED: probable WRKY transcription factor 65
TrEMBL	A0A1U7V0I8	5e-75	A0A1U7V0I8_NICSY; probable WRKY transcription factor 65 isoform X2
STRING	XP_009758490.1	7e-74	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA6475	23	33

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G29280.1	2e-48	WRKY DNA-binding protein 65