PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc004436.1_g00002.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family ERF
Protein Properties Length: 175aa    MW: 19115.2 Da    PI: 5.353
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc004436.1_g00002.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2323e-108352855
                      AP2 28 rkrfslgkfgtaeeAakaaiaarkkleg 55
                             ++r++lg+f taeeAa+a+++a+  ++g
  Itr_sc004436.1_g00002.1  8 KRRVWLGTFETAEEAARAYDEAAILMNG 35
                             59*********************98876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103214.131143IPR001471AP2/ERF domain
SMARTSM003807.4E-13549IPR001471AP2/ERF domain
SuperFamilySSF541711.9E-12644IPR016177DNA-binding domain
PfamPF008479.4E-7735IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.4E-18744IPR001471AP2/ERF domain
CDDcd000189.59E-20845No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 175 aa     Download sequence    Send to blast
MHISIYRKRR VWLGTFETAE EAARAYDEAA ILMNGRNAKT NFPVAANKDG KEDKSSSSAA  60
SSSSSSSSSS LSAILSAKLR KCCKSLSPSL TCLRLDTENS NIGVWQKRAG TSSDSNWVMT  120
VELGNKQPPP PKQESLSSET SEHTRDAVIV DDGNQTVNEE EKMALQMIEE LLNEN
Functional Description ? help Back to Top
Source Description
UniProtPromotes cuticle formation by inducing the expression of enzymes involved in wax biosynthesis (PubMed:15070782, PubMed:15319479). Confers drought resistance (PubMed:15319479). Acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:15070782, ECO:0000269|PubMed:15319479}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU1714191e-100GU171419.1 Puccinia kuehnii microsatellite Stv_Puk_51 sequence.
GenBankGU1715511e-100GU171551.1 Ipomoea batatas microsatellite Stv_Ipb_169 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019150136.13e-82PREDICTED: ethylene-responsive transcription factor WIN1
SwissprotQ9XI336e-57WIN1_ARATH; Ethylene-responsive transcription factor WIN1
TrEMBLA0A314YPB27e-64A0A314YPB2_PRUYE; Ethylene-responsive transcription factor WIN1
STRINGXP_008243869.11e-62(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13522476
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G15360.15e-45ERF family protein
Publications ? help Back to Top
  1. Taketa S, et al.
    Barley grain with adhering hulls is controlled by an ERF family transcription factor gene regulating a lipid biosynthesis pathway.
    Proc. Natl. Acad. Sci. U.S.A., 2008. 105(10): p. 4062-7
    [PMID:18316719]
  2. Al-Abdallat AM,Al-Debei HS,Ayad JY,Hasan S
    Over-expression of SlSHN1 gene improves drought tolerance by increasing cuticular wax accumulation in tomato.
    Int J Mol Sci, 2014. 15(11): p. 19499-515
    [PMID:25350113]
  3. Djemal R,Khoudi H
    Isolation and molecular characterization of a novel WIN1/SHN1 ethylene-responsive transcription factor TdSHN1 from durum wheat (Triticum turgidum. L. subsp. durum).
    Protoplasma, 2015. 252(6): p. 1461-73
    [PMID:25687296]
  4. Sadler C, et al.
    Wax and cutin mutants of Arabidopsis: Quantitative characterization of the cuticular transport barrier in relation to chemical composition.
    Biochim. Biophys. Acta, 2016. 1861(9 Pt B): p. 1336-1344
    [PMID:26965486]
  5. Sajeevan RS, et al.
    Expression of Arabidopsis SHN1 in Indian Mulberry (Morus indica L.) Increases Leaf Surface Wax Content and Reduces Post-harvest Water Loss.
    Front Plant Sci, 2017. 8: p. 418
    [PMID:28421085]