PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc004615.1_g00002.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

BES1

Protein Properties

Length: 90aa MW: 10085.5 Da PI: 10.5046

Description

BES1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc004615.1_g00002.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF822	87.7	3e-27	8	70	9	70
DUF822 9 wkErE.nnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyr 70 +E+ k RER+RR +a++ aGL ++Gny+lp+ra +n+Vl+A eAG++v +DGttyr Itr_sc004615.1_g00002.1 8 KREKQmDGKIRERKRREFTARMIAGLLQHGNYNLPARASQNQVLAAVVSEAGYTVGPDGTTYR 70 4565524699****************************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05687	4.8E-25	8	71	IPR008540	BES1/BZR1 plant transcription factor, N-terminal

Sequence ? help Back to Top
Protein Sequence Length: 90 aa Download sequence Send to blast
MSPNPQPKRE KQMDGKIRER KRREFTARMI AGLLQHGNYN LPARASQNQV LAAVVSEAGY 60 TVGPDGTTYR PPPPSNVVST SIYYFIFLGF

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	4	11	PQPKREKQ
2	18	23	ERKRRE

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019156606.1	2e-20	PREDICTED: beta-amylase 8-like
Swissprot	Q9FH80	3e-16	BAM8_ARATH; Beta-amylase 8
TrEMBL	A0A443P8Y7	2e-19	A0A443P8Y7_9MAGN; Beta-amylase
STRING	GLYMA01G35500.2	1e-18	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA6204	21	30

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G45300.1	1e-18	beta-amylase 2

Publications ? help Back to Top
Soyk S, et al. The Enzyme-Like Domain of Arabidopsis Nuclear β-Amylases Is Critical for DNA Sequence Recognition and Transcriptional Activation. Plant Cell, 2014. 26(4): p. 1746-1763 [PMID:24748042]