PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc004733.1_g00002.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family C3H
Protein Properties Length: 361aa    MW: 38932.1 Da    PI: 6.2327
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc004733.1_g00002.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH23.21.2e-07105129126
                              --S---SGGGGTS--TTTTT-SS-SS CS
                  zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                              +kt+lC+ f++ G C+y  +C+FaHg
  Itr_sc004733.1_g00002.1 105 FKTKLCCKFRA-GVCPYITNCNFAHG 129
                              69*********.*************8 PP
2zf-CCCH17.38.4e-06182207126
                              --S---SGGGGTS--TTTTT-SS-SS CS
                  zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                              yk + C+ f+    C+yGd+C F H+
  Itr_sc004733.1_g00002.1 182 YKGRHCKKFYTEEGCPYGDSCAFLHD 207
                              78888********************7 PP
3zf-CCCH42.98e-14242267126
                              --S---SGGGGTS--TTTTT-SS-SS CS
                  zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                              +kt++C+ +  tG+C++G++C+FaHg
  Itr_sc004733.1_g00002.1 242 WKTRICNKWETTGYCPFGSKCHFAHG 267
                              8************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902296.67E-8102135IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.8E-14102137IPR000571Zinc finger, CCCH-type
SMARTSM003560.014104130IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.418104131IPR000571Zinc finger, CCCH-type
PfamPF006427.1E-5105129IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.9E-9179209IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.83E-7180209IPR000571Zinc finger, CCCH-type
SMARTSM003560.095181208IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.835181209IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.9E-18237272IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.75E-10238272IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.788241269IPR000571Zinc finger, CCCH-type
SMARTSM003561.5E-8241268IPR000571Zinc finger, CCCH-type
PfamPF006426.6E-11242267IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 361 aa     Download sequence    Send to blast
MDFIGETVAG GNVLSGSDDV EMSGGFDNWG IPGSMDQGVW ATEDDYNAWN PGSSVETPSN  60
SGLDGRLSQN HSGGEPPNKR SRNSQGGDAH VIVPTRSKAI GKMFFKTKLC CKFRAGVCPY  120
ITNCNFAHGI EELRKPPPNW QEIVAAHESE LGGGVVVEPP REEHQIPTMS SPDLRGETQR  180
SYKGRHCKKF YTEEGCPYGD SCAFLHDEQS RARESVAISV TPTAGPGFGN SATAANQKPS  240
NWKTRICNKW ETTGYCPFGS KCHFAHGAEE LHKFGGGLAE GEGKDSPSAP SNINQGGVTE  300
NMAAVSTISA PHGDVYHLGL GVPIQRSSCS ISQRTGERPI QKWKGPDKIS KIYGDWIDDI  360
E
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019184210.10.0PREDICTED: zinc finger CCCH domain-containing protein 56-like isoform X2
SwissprotQ84UQ31e-119C3H56_ORYSJ; Zinc finger CCCH domain-containing protein 56
TrEMBLA0A3Q7H1U20.0A0A3Q7H1U2_SOLLC; Uncharacterized protein
STRINGSolyc06g072720.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA37292343
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32360.11e-120C3H family protein