PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc004898.1_g00003.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family GATA
Protein Properties Length: 158aa    MW: 18201.5 Da    PI: 9.1118
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc004898.1_g00003.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA56.73.2e-1894128135
                     GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                              Cs+C t +Tp+WR gp g+ tLCnaCG++y++ +l
  Itr_sc004898.1_g00003.1  94 CSHCETEDTPQWRMGPMGPNTLCNACGVRYKSGRL 128
                              *******************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004011.6E-1588142IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.24E-1390149No hitNo description
Gene3DG3DSA:3.30.50.104.2E-1592126IPR013088Zinc finger, NHR/GATA-type
PROSITE profilePS5011411.79392124IPR000679Zinc finger, GATA-type
CDDcd002025.93E-1493144No hitNo description
PfamPF003204.8E-1694128IPR000679Zinc finger, GATA-type
PROSITE patternPS00344094119IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 158 aa     Download sequence    Send to blast
MAIENSDGDA KSIGLCVPPD SLDDLDFFPN FSDDFISITD LLLFSTPEKE TVQDESQNEK  60
RKRCYKPARS KTGEGRRRRY NNNPNNCGWK KRKCSHCETE DTPQWRMGPM GPNTLCNACG  120
VRYKSGRLVP QYRPLASPTF DSSKHSNFHR KIMQHRRV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17692RRRYNNNPNNCGWKKRK
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). Transcription activator involved in xylem formation. Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867). {ECO:0000250|UniProtKB:Q8LAU9, ECO:0000269|PubMed:25265867}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019184148.14e-86PREDICTED: GATA transcription factor 12-like
SwissprotP697812e-34GAT12_ARATH; GATA transcription factor 12
TrEMBLA0A484NJ358e-52A0A484NJ35_9ASTE; Uncharacterized protein
STRINGXP_006432141.15e-41(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA11542481
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25830.16e-34GATA transcription factor 12
Publications ? help Back to Top
  1. Ravindran P,Verma V,Stamm P,Kumar PP
    A Novel RGL2-DOF6 Complex Contributes to Primary Seed Dormancy in Arabidopsis thaliana by Regulating a GATA Transcription Factor.
    Mol Plant, 2017. 10(10): p. 1307-1320
    [PMID:28917589]