PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc004953.1_g00001.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

CPP

Protein Properties

Length: 872aa MW: 94458 Da PI: 6.791

Description

CPP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc004953.1_g00001.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCR	48.4	1.9e-15	471	509	3	41
TCR 3 kkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 +k+CnCk+skClk+YC+Cfaag +C+e C C++C+N+ e Itr_sc004953.1_g00001.1 471 CKRCNCKRSKCLKLYCDCFAAGIYCAEPCACQGCFNRPE 509 79**********************************876 PP
2	TCR	49.2	1e-15	558	596	1	39
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 ++k+gCnCk+s ClkkYCeC++a++ Cs+ C+Ce+CkN Itr_sc004953.1_g00001.1 558 RHKRGCNCKRSMCLKKYCECYQANVGCSSGCRCEGCKNV 596 589***********************************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01114	9.0E-17	469	510	IPR033467	Tesmin/TSO1-like CXC domain
PROSITE profile	PS51634	35.113	470	598	IPR005172	CRC domain
Pfam	PF03638	1.9E-11	472	507	IPR005172	CRC domain
SMART	SM01114	3.7E-17	558	599	IPR033467	Tesmin/TSO1-like CXC domain
Pfam	PF03638	2.3E-11	560	595	IPR005172	CRC domain

Sequence ? help Back to Top
Protein Sequence Length: 872 aa Download sequence Send to blast
MDSPVPSKTT ATPTSAAAAS SFSVSESAAV QVHFNLFLDV EESPFSNYLS SLSPIGPVKT 60 AIVVQDFPGI ITPPHVFTSP RINPRIASSF LERGPFLQLP NEEFSVKDDS QNNVSTLRDQ 120 AGSSNTQLNS GFVPRTDKVS DNNSPVQEQT ESQPICVDDF LVDAAKLGSV DSKNSSLQQA 180 DGLIGSKESV DLKGKENKNN NEIEMATGDI NSMKTNGKDD AESVPSSKMQ PHSSLENQYD 240 HRGTSEAGEH QRGVFRRCLQ FEDVQPKTAL TPDPCNLSES VNCSNSAVSP IALEALESFP 300 LNTPTAQSSR QFGDTQNTEN SSFKTPKPSG IGLHLNSIVS TVQGGSGATV SMTAERGNFS 360 LQGKKLMSMT SHLEKSKKCL ISSNVGEDIL ASIEESSLQG ESSAPLPLHS VKPIDSIASL 420 KPMKCLSTPG NKRKSSSENI DGTMASNQSS PKKKRQAYLK KTSDASDGDG CKRCNCKRSK 480 CLKLYCDCFA AGIYCAEPCA CQGCFNRPEY EDTVLETRQQ IESRNPLAFA PKVVQHMTDS 540 HSNIVGDTGV SFTPSSARHK RGCNCKRSMC LKKYCECYQA NVGCSSGCRC EGCKNVYGQK 600 EEYGRIKTLV KKLGTFEQTE LSNPHNLTPL TPSFQCSDHR NDASKSWFTS GRCSQSPESG 660 HTLIPRYGVS KKGFTKSSDN PESIEETTDI MDLVSFDPEM EDNNSAAANE YSPGEMNQLV 720 VLPNSQQWVN DSRERLYAGP CHLSSTSSFG WRSSPMTPMT QYDGSKEFYE SINSGKSSFN 780 AIEDDTPEIL KDASTPPGGV KVSSPNKKRV SPPHGRLKDP DDGSSSARRL KAGRKYKLGS 840 VPSFPPLTPC FVSKGSSEDQ IKNDTQKPSS SP

Sequence ? help Back to Top

Protein Sequence Length: 872 aa Download sequence Send to blast

MDSPVPSKTT ATPTSAAAAS SFSVSESAAV QVHFNLFLDV EESPFSNYLS SLSPIGPVKT  60
AIVVQDFPGI ITPPHVFTSP RINPRIASSF LERGPFLQLP NEEFSVKDDS QNNVSTLRDQ  120
AGSSNTQLNS GFVPRTDKVS DNNSPVQEQT ESQPICVDDF LVDAAKLGSV DSKNSSLQQA  180
DGLIGSKESV DLKGKENKNN NEIEMATGDI NSMKTNGKDD AESVPSSKMQ PHSSLENQYD  240
HRGTSEAGEH QRGVFRRCLQ FEDVQPKTAL TPDPCNLSES VNCSNSAVSP IALEALESFP  300
LNTPTAQSSR QFGDTQNTEN SSFKTPKPSG IGLHLNSIVS TVQGGSGATV SMTAERGNFS  360
LQGKKLMSMT SHLEKSKKCL ISSNVGEDIL ASIEESSLQG ESSAPLPLHS VKPIDSIASL  420
KPMKCLSTPG NKRKSSSENI DGTMASNQSS PKKKRQAYLK KTSDASDGDG CKRCNCKRSK  480
CLKLYCDCFA AGIYCAEPCA CQGCFNRPEY EDTVLETRQQ IESRNPLAFA PKVVQHMTDS  540
HSNIVGDTGV SFTPSSARHK RGCNCKRSMC LKKYCECYQA NVGCSSGCRC EGCKNVYGQK  600
EEYGRIKTLV KKLGTFEQTE LSNPHNLTPL TPSFQCSDHR NDASKSWFTS GRCSQSPESG  660
HTLIPRYGVS KKGFTKSSDN PESIEETTDI MDLVSFDPEM EDNNSAAANE YSPGEMNQLV  720
VLPNSQQWVN DSRERLYAGP CHLSSTSSFG WRSSPMTPMT QYDGSKEFYE SINSGKSSFN  780
AIEDDTPEIL KDASTPPGGV KVSSPNKKRV SPPHGRLKDP DDGSSSARRL KAGRKYKLGS  840
VPSFPPLTPC FVSKGSSEDQ IKNDTQKPSS SP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5fd3_A	7e-19	474	610	14	131	Protein lin-54 homolog
5fd3_B	7e-19	474	610	14	131	Protein lin-54 homolog
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019167925.1	0.0	PREDICTED: protein tesmin/TSO1-like CXC 2
Refseq	XP_019167927.1	0.0	PREDICTED: protein tesmin/TSO1-like CXC 2
Refseq	XP_019167928.1	0.0	PREDICTED: protein tesmin/TSO1-like CXC 2
TrEMBL	A0A484N993	0.0	A0A484N993_9ASTE; Uncharacterized protein
STRING	Solyc08g067150.2.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA6980	21	28

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G14770.1	4e-63	TESMIN/TSO1-like CXC 2