PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc004991.1_g00002.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

NF-YB

Protein Properties

Length: 159aa MW: 17118.9 Da PI: 4.7309

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc004991.1_g00002.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	79.4	4.8e-25	28	92	28	92
NF-YB 28 skdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyre 92 ++aketvq+cv+efi +vt++a++++++e+rkt+++ddl+wa+ lG+ y+++l+ +++ yr Itr_sc004991.1_g00002.1 28 RDEAKETVQKCVTEFIHYVTAKANERAKQERRKTVTTDDLIWAMRALGLGSYAQELTDFITDYRA 92 689************************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47113	2.58E-19	28	93	IPR009072	Histone-fold
Gene3D	G3DSA:1.10.20.10	3.2E-24	29	95	IPR009072	Histone-fold
Pfam	PF00808	3.8E-14	29	71	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
PRINTS	PR00615	5.2E-6	35	53	No hit	No description
PRINTS	PR00615	5.2E-6	54	72	No hit	No description
PRINTS	PR00615	5.2E-6	73	91	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 159 aa Download sequence Send to blast
MNADDNTNAN MNADNAAAAG YPEIGSDRDE AKETVQKCVT EFIHYVTAKA NERAKQERRK 60 TVTTDDLIWA MRALGLGSYA QELTDFITDY RAKHVHGRAA THLLPPPPVQ QVPFMQGFPV 120 PGFAPGPMND GAGGSASSSS PLGGDYFLDP SYPPTNFDG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5g49_A	9e-18	29	91	34	96	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019155265.1	2e-54	PREDICTED: nuclear transcription factor Y subunit B-4-like

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G21970.1	4e-21	NF-YB family protein