PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc005890.1_g00001.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family M-type_MADS
Protein Properties Length: 192aa    MW: 21600.8 Da    PI: 9.7374
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc005890.1_g00001.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF70.21.9e-222170251
                             ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                   SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                             rien+  r vtfskRr+ ++KKA+E+S+LC++e+ +++fs++gk +++s+
  Itr_sc005890.1_g00001.1 21 RIENEVHRLVTFSKRRTSLFKKASEMSTLCGTEIVMVVFSPSGKPFTFSN 70
                             9***********************************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006624.0111272IPR002100Transcription factor, MADS-box
SMARTSM004325.2E-261271IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.24E-241386IPR002100Transcription factor, MADS-box
PRINTSPR004042.1E-181434IPR002100Transcription factor, MADS-box
PfamPF003193.7E-232168IPR002100Transcription factor, MADS-box
PRINTSPR004042.1E-183449IPR002100Transcription factor, MADS-box
PRINTSPR004042.1E-184970IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 192 aa     Download sequence    Send to blast
MSHRNTSRGV TRGRHRVPLA RIENEVHRLV TFSKRRTSLF KKASEMSTLC GTEIVMVVFS  60
PSGKPFTFSN PDMNAVLTKY FGEIPTTEAN IAEPIIRAHQ EAKMRAMTSQ INILEAQIDE  120
EMLVNQALRE AKKGRPSNSD LQLPELQSMK HRMETLSDQV MEKLNMFFIM EAQSQAMETR  180
FGANDGAGPS GV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3mu6_A2e-161380168Myocyte-specific enhancer factor 2A
3mu6_B2e-161380168Myocyte-specific enhancer factor 2A
3mu6_C2e-161380168Myocyte-specific enhancer factor 2A
3mu6_D2e-161380168Myocyte-specific enhancer factor 2A
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019179195.13e-69PREDICTED: agamous-like MADS-box protein AGL61
TrEMBLA0A328DKU42e-57A0A328DKU4_9ASTE; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20424223
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.12e-27AGAMOUS-like 61