PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc006004.1_g00002.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family C2H2
Protein Properties Length: 184aa    MW: 20838 Da    PI: 4.4094
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc006004.1_g00002.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.84e-053557123
                             EEETTTTEEESSHHHHHHHHHHT CS
                  zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                             y+C +C++sF    ++ rH + H
  Itr_sc006004.1_g00002.1 35 YECDICKMSFDKLTEYARHRKFH 57
                             99******************998 PP
2zf-C2H215.16.8e-0581101121
                              EEETTTTEEESSHHHHHHHHH CS
                  zf-C2H2   1 ykCpdCgksFsrksnLkrHir 21 
                              y C+ C+k+F +k ++ rH+r
  Itr_sc006004.1_g00002.1  81 YGCQFCPKVFDTKVTYSRHLR 101
                              67*****************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.02E-735101No hitNo description
SMARTSM003550.0753557IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.6193557IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.604.5E-53557IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS0002803757IPR007087Zinc finger, C2H2
SMARTSM003550.09881106IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.38881111IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 184 aa     Download sequence    Send to blast
MESPKFLSLS ANQNDDAAEG TNDNNLVDVQ VQGDYECDIC KMSFDKLTEY ARHRKFHRET  60
LTGYQRWPRL TDGAIMKDGK YGCQFCPKVF DTKVTYSRHL RPNGTHSAEI NMLTEMNVPI  120
QVEPIAGIAY YGMDPTSGVR DEAADSRVQD KAAFDEVSAR DKDDDEDDEL GNLRLLSEVS  180
VREE