PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc006005.1_g00001.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family M-type_MADS
Protein Properties Length: 242aa    MW: 27470.4 Da    PI: 10.0754
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc006005.1_g00001.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF49.84.4e-161150342
                             --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
                   SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                             i n+s+r++++ kR+ g+lKK +EL +LCda va+i++ss
  Itr_sc006005.1_g00001.1 11 IVNESKRKTSYRKRKRGLLKKINELTILCDAVVAMIMYSS 50
                             789***********************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004326.8E-19160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006618.376150IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.75E-20186IPR002100Transcription factor, MADS-box
CDDcd002666.15E-23286No hitNo description
PRINTSPR004041.2E-9323IPR002100Transcription factor, MADS-box
PfamPF003196.5E-151150IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-92338IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-93859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    Send to blast
MARRRLRLTY IVNESKRKTS YRKRKRGLLK KINELTILCD AVVAMIMYSS FEQGPVIWPP  60
TVERYEELIV RFLNLPDEQQ TRRMMDNESL NTRRIEKLNT QLLNLKSNNR KREMNALMHQ  120
ILTGEQTMDY LNSIELNDLG WVLNTNLADV GMRFRELVRD SSPTLAPTAS PSVLGPGTSN  180
VVSPADVFSG QSYQGMVGMQ TPMSPNLNPG MALNYQNWNF MNSSIQNDPT QGGPGPSTSK  240
NP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1224RRRLRLTYIVNESKRKTSYRKRK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019170462.11e-115PREDICTED: agamous-like MADS-box protein AGL80
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA15322367
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.15e-23AGAMOUS-like 80