PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc006005.1_g00006.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

M-type_MADS

Protein Properties

Length: 120aa MW: 12801.9 Da PI: 4.4553

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc006005.1_g00006.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	23.7	6.1e-08	1	23	20	42
HHHHHHHHHHHHT-EEEEEEE-T CS SRF-TF 20 ilKKAeELSvLCdaevaviifss 42 +lKK +EL +LCd+ va+i++ss Itr_sc006005.1_g00006.1 1 MLKKINELTILCDVVVAMIMYSS 23 59*******************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF55455	8.37E-8	1	37	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	8.97	1	23	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	3.4E-6	1	23	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 120 aa Download sequence Send to blast
MLKKINELTI LCDVVVAMIM YSSFEQGPVI WPPTVMFEKL IVRKLVTDSS PTLAPFLSAT 60 ASPSVLGLGT SNVDVFSGQS YQGMVGMVGM QTPMSPNLNP GMASNYQTQG EPGLSTSQNP

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019155497.1	2e-13	PREDICTED: agamous-like MADS-box protein AGL80

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1532	23	67

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G31640.1	3e-07	AGAMOUS-like 92