PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc006412.1_g00003.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family GATA
Protein Properties Length: 210aa    MW: 23447.6 Da    PI: 9.8968
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc006412.1_g00003.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA55.86.2e-18117150134
                     GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                              Cs+C++t+Tp+WR+gp g+ tLCn+CG++yr  +
  Itr_sc006412.1_g00003.1 117 CSHCKATETPQWRKGPMGPNTLCNPCGVRYRTGR 150
                              *******************************877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011412.4111147IPR000679Zinc finger, GATA-type
SMARTSM004012.0E-15111165IPR000679Zinc finger, GATA-type
SuperFamilySSF577163.18E-15115174No hitNo description
Gene3DG3DSA:3.30.50.102.0E-14115148IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.02E-14116163No hitNo description
PfamPF003201.2E-15117150IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 210 aa     Download sequence    Send to blast
MLVWEGSTIT PGDTSTKVNF NYTYSSVSAT PVQKKLEDIE GRKSAVAAAV LPSAFAAAAV  60
LPMSNLYFDF IVPIRKRTKR ARSASNPWIR NGLPSSSTTA SEKTPCRQEG SKEFRECSHC  120
KATETPQWRK GPMGPNTLCN PCGVRYRTGR LFPEYRPANS PTFVPTLHSS YHRKVVEMRR  180
KGVEEAVVVD EDSVKRDAEE DKKKMEEAKN
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019197212.13e-69PREDICTED: GATA transcription factor 11-like
TrEMBLA0A2J6K5W32e-42A0A2J6K5W3_LACSA; Uncharacterized protein
STRINGXP_009795845.11e-39(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA31342149
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32890.18e-34GATA transcription factor 9