PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc006559.1_g00002.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family M-type_MADS
Protein Properties Length: 194aa    MW: 21872.4 Da    PI: 10.3169
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc006559.1_g00002.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF71.85.9e-232070150
                             S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT.SEEEEEE CS
                   SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst.gklyeys 50
                             +rien+ +r+vtfskR  g++KKA+E+S+LC++e++v++fs++  k+y++ 
  Itr_sc006559.1_g00002.1 20 SRIENDARRTVTFSKRPFGLFKKASEISTLCGVEILVVVFSPNkEKVYTFG 70
                             59***************************************8626899995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.5E-261272IPR002100Transcription factor, MADS-box
PROSITE profilePS5006621.0951273IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.96E-251389IPR002100Transcription factor, MADS-box
PRINTSPR004043.0E-131434IPR002100Transcription factor, MADS-box
PfamPF003192.5E-222169IPR002100Transcription factor, MADS-box
PRINTSPR004043.0E-133449IPR002100Transcription factor, MADS-box
PRINTSPR004043.0E-134970IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 194 aa     Download sequence    Send to blast
MSSNNSTRMV SRGRQRIPLS RIENDARRTV TFSKRPFGLF KKASEISTLC GVEILVVVFS  60
PNKEKVYTFG SPSVKAVLDR YVAESENRTI EASATEELLR SRKEADIGFL NLQINVLEAA  120
IQHEMEVKEA LTEAAKGMPS ISNLPMADLL SMKQQMEILQ SNVFQILNPQ LQTQMMLIQV  180
VQLHFKKPSS KKTK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019185048.17e-86PREDICTED: MADS-box transcription factor 23-like
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20424223
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.11e-26AGAMOUS-like 61