PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc008279.1_g00001.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family C2H2
Protein Properties Length: 199aa    MW: 22895.1 Da    PI: 8.487
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc008279.1_g00001.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.35.7e-05117137323
                              ETTTTEEESSHHHHHHHHHHT CS
                  zf-C2H2   3 CpdCgksFsrksnLkrHirtH 23 
                              C++Cgk+F +   L+ H++ H
  Itr_sc008279.1_g00001.1 117 CKKCGKVFDSIRALNGHMQIH 137
                              ******************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.2E-91336No hitNo description
SMARTSM003550.221436IPR015880Zinc finger, C2H2-like
PfamPF139120.00611436IPR007087Zinc finger, C2H2
PROSITE patternPS0002801636IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.604.8E-4106139IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.2E-9110137No hitNo description
PfamPF139125.0E-6114138IPR007087Zinc finger, C2H2
SMARTSM003550.0022115137IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.887115142IPR007087Zinc finger, C2H2
PROSITE patternPS000280117137IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 199 aa     Download sequence    Send to blast
MVFMEEEEAQ EQKFICKFCD KVCLSGRSLG GHMRGHLPLI AAAKKQKTKA DKNSDQNSVQ  60
SKSGKIREKG KSLVLGEDDD GLTENPNKSW KVFYSKESLK RFPDNQRRYD EEEHHLCKKC  120
GKVFDSIRAL NGHMQIHSKR SRLSREESME NQCPVLKKRS AIRYEITENS PFSVASDLEE  180
AAVCLMMLSR GFQEWDFVL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019157081.11e-102PREDICTED: zinc finger protein ZAT4-like
TrEMBLA0A2G2V9E96e-44A0A2G2V9E9_CAPBA; Uncharacterized protein
STRINGSolyc02g088670.1.14e-43(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA69272231
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26610.13e-15C2H2-like zinc finger protein