PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc008946.1_g00001.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

Dof

Protein Properties

Length: 244aa MW: 27596.9 Da PI: 8.2054

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc008946.1_g00001.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	88.3	6.9e-28	33	88	6	61
zf-Dof 6 lkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 ++cprC+s++tkf y+nny ++qPry+C++C+ryWt+GG+ +++P Gg + k k+s Itr_sc008946.1_g00001.1 33 RECPRCQSNDTKFSYFNNYKVNQPRYYCRTCKRYWTHGGTQQDIPKGGRSHKGKRS 88 68***********************************************9999886 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF02701	1.3E-25	33	87	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	23.971	33	87	IPR003851	Zinc finger, Dof-type
ProDom	PD007478	2.0E-15	34	84	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	35	71	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 244 aa Download sequence Send to blast
MEQNRRPGDY HVSLPLVRRS RVVDYHGTPL PPRECPRCQS NDTKFSYFNN YKVNQPRYYC 60 RTCKRYWTHG GTQQDIPKGG RSHKGKRSTR RHENQRIQLA ALPSPPQLQP LNPSAIVASP 120 AFISPIVPPM MTPYQASGGF SPPMMEEEIA QLQQFEAKNG YLNWVNPLNI VDQSFPQLTN 180 GHSDSCMENY RLTNSEASSS NIVPLDTSMG KISTTNGGTN VSWDSSFVDL DEWLDFPIDF 240 SPSV

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019167853.1	1e-134	PREDICTED: dof zinc finger protein DOF5.6-like

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA88	24	419

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66940.1	1e-21	Dof family protein