PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc010154.1_g00001.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family ERF
Protein Properties Length: 152aa    MW: 16984.3 Da    PI: 10.5509
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc010154.1_g00001.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2422.3e-132976255
                      AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                              ykG+r +k +g+WvAeIrd      ++r +l ++ t   Aa+a+  a  +l+g
  Itr_sc010154.1_g00001.1 29 PYKGIRMRK-WGKWVAEIRDT-----NTRLWLCSYYTSVAAARAYNVALFYLRG 76
                             59*****99.**********5.....599999999998*************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103219.0452984IPR001471AP2/ERF domain
SMARTSM003804.4E-272990IPR001471AP2/ERF domain
SuperFamilySSF541711.7E-152984IPR016177DNA-binding domain
CDDcd000183.04E-203085No hitNo description
PRINTSPR003671.9E-93041IPR001471AP2/ERF domain
PfamPF008473.1E-83076IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.5E-233085IPR001471AP2/ERF domain
PRINTSPR003671.9E-96686IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 152 aa     Download sequence    Send to blast
MAVGSGDGVG ASRGGGAEKK KRGPKQKNPY KGIRMRKWGK WVAEIRDTNT RLWLCSYYTS  60
VAAARAYNVA LFYLRGPGAK LNFPNCLVGD GHHRQLTPKE IQNRATTVGY RIDAIQRGIH  120
RSSTQMSVNV VDHRPESDVY VTPDLNKYPH LD
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015071928.16e-43ethylene-responsive transcription factor ERF010
TrEMBLA0A3Q7H1Z84e-41A0A3Q7H1Z8_SOLLC; Uncharacterized protein
STRINGSolyc04g078640.1.14e-42(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA9432390
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46768.12e-33related to AP2 1