PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc010164.1_g00001.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

bHLH

Protein Properties

Length: 149aa MW: 16585.1 Da PI: 10.7149

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc010164.1_g00001.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	31.1	4.1e-10	110	139	1	30
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC CS HLH 1 rrrahnerErrRRdriNsafeeLrellPka 30 +r +h ++Er+RR+++N+ ++ Lr+l+P++ Itr_sc010164.1_g00001.1 110 QRITHIAVERNRRKQMNEHLAVLRSLMPES 139 799*************************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	1.74E-7	108	143	No hit	No description
SuperFamily	SSF47459	9.6E-9	108	140	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.1E-8	108	140	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	10.849	109	149	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.8E-7	110	139	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 149 aa Download sequence Send to blast
MALEALSTNE LFNLIIYDTF SATPLSHNDA SETTNLAAAA VGPKPAPQDL GGGLEGCSSM 60 PAWRRRHSVG GEMITPQSRP LQNLAVQGGG RKKRRRRPKI CKNKEEAETQ RITHIAVERN 120 RRKQMNEHLA VLRSLMPESY VQRCLALLR

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	90	96	RKKRRRR
2	91	96	KKRRRR

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019190680.1	3e-65	PREDICTED: transcription factor bHLH71-like
TrEMBL	A0A2C9UHA0	6e-41	A0A2C9UHA0_MANES; Uncharacterized protein
STRING	cassava4.1_012613m	9e-42	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5632	24	36

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G22490.1	5e-20	bHLH family protein