PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc010192.1_g00001.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family B3
Protein Properties Length: 292aa    MW: 33309.1 Da    PI: 9.4648
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc010192.1_g00001.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3581.7e-1877166198
                              EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                       B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                              f+k l+ps+v  s +l +pk f++++     ++ t++l de+g++++ ++  ++++    l++GW+ F  a++L  gD ++F+l++
  Itr_sc010192.1_g00001.1  77 FLKCLLPSNVAHSFWLHIPKAFCDSYLP--SQNSTIMLVDEWGNEYKTTYLLERHG----LSAGWRAFSIAHRLLKGDLLIFRLTE 156
                              89************************42..34559***************777776....***********************987 PP

                              SSEE..EEEEE- CS
                       B3  87 rsefelvvkvfr 98 
                               ++f  +v+++r
  Itr_sc010192.1_g00001.1 157 PNKF--KVHIVR 166
                              6777..888877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.9E-2169167IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019368.83E-2370168IPR015300DNA-binding pseudobarrel domain
CDDcd100177.47E-2475166No hitNo description
PfamPF023626.6E-1577166IPR003340B3 DNA binding domain
SMARTSM010195.8E-2077168IPR003340B3 DNA binding domain
PROSITE profilePS5086312.90177168IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    Send to blast
SKKKMTIESK KNLVCKKPES VKSTAKQVKS DNPRISESSK RKRETCNVTF DDVEAKFSVW  60
ERAERLLSSL EDEYPFFLKC LLPSNVAHSF WLHIPKAFCD SYLPSQNSTI MLVDEWGNEY  120
KTTYLLERHG LSAGWRAFSI AHRLLKGDLL IFRLTEPNKF KVHIVRVNSR DVVEAAICLM  180
NLNDHEKASN PGNHKRRSSI KFVQPYPEGA SEMCISALSV VDHRTLGCPS SESSNAVDDA  240
DAISCHRKLP AKFHGLHFFI LLRCRRRRRK GEGWGEGLAG EVKDEACRRQ ES
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019165219.11e-93PREDICTED: B3 domain-containing protein At5g42700-like
TrEMBLA0A328CZE41e-94A0A328CZE4_9ASTE; Uncharacterized protein
STRINGXP_009772548.17e-87(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA16282371
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42700.12e-31B3 family protein