PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc010762.1_g00001.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family GATA
Protein Properties Length: 147aa    MW: 15738.3 Da    PI: 11.224
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc010762.1_g00001.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA529.6e-17111144134
                     GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                              Cs+C++t+Tp+WR+gp g  tLCn+CG++y   +
  Itr_sc010762.1_g00001.1 111 CSHCKATETPQWRKGPMGLNTLCNPCGIRYSTGR 144
                              ******************************8765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011411.991105147IPR000679Zinc finger, GATA-type
SMARTSM004017.4E-6105145IPR000679Zinc finger, GATA-type
SuperFamilySSF577165.23E-12107141No hitNo description
Gene3DG3DSA:3.30.50.102.3E-14109142IPR013088Zinc finger, NHR/GATA-type
CDDcd002022.59E-11110140No hitNo description
PfamPF003205.0E-14111142IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 147 aa     Download sequence    Send to blast
MPQVGPGRKK KKSKVETGHK SAATPSAVAT VVLPFAAVVL PSAAAAAAAA VSLSATLVYH  60
GGSSSTLNTM SNLYFDFIVP IRKRTKRARS ASNPWIRNGV GVPLLKEFRE CSHCKATETP  120
QWRKGPMGLN TLCNPCGIRY STGRLWK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019197211.13e-36PREDICTED: GATA transcription factor 9-like
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54810.23e-14GATA family protein