PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc011399.1_g00001.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family FAR1
Protein Properties Length: 135aa    MW: 14997.1 Da    PI: 8.8917
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc011399.1_g00001.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR148.13.7e-1557134169
                     FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..........tekerrtraetrtgCkaklkvk 69 
                              +fY +YA +vGF+vr+s+++k  r g++ ++ +vCs++g++++ k+           + + +r+r+++r+gC+ak+ +k
  Itr_sc011399.1_g00001.1  57 DFYVQYACTVGFDVRRSTETKD-RMGNVLRKYLVCSRKGFKQPAKDVcpvgeevgdgSISPKRRRVTNRVGCNAKIILK 134
                              6*****************9998.6677****************9988********99889999************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031014.5E-1257134IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 135 aa     Download sequence    Send to blast
MAASFCDDEG LSGGSDGSNE CVMNLSPRGT KYWIPSCDEA RQPFVGQRFS KLDDGIDFYV  60
QYACTVGFDV RRSTETKDRM GNVLRKYLVC SRKGFKQPAK DVCPVGEEVG DGSISPKRRR  120
VTNRVGCNAK IILKR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1116120KRRRV
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019172923.13e-47PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
RefseqXP_019178867.13e-45PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28530.13e-12FAR1-related sequence 10