PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc012176.1_g00001.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family MYB_related
Protein Properties Length: 214aa    MW: 24273.8 Da    PI: 5.7203
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc012176.1_g00001.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.23.3e-171251445
                             S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
          Myb_DNA-binding  4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45
                             W++eE+  lv++++qlG++ W+ Ia++++ gR+++++k++w+
  Itr_sc012176.1_g00001.1 12 WSEEEERVLVEVHEQLGNR-WSEIAKRIP-GRSENSIKNHWN 51
                             *******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129422.185158IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.1E-18858IPR009057Homeodomain-like
SMARTSM007172.5E-13856IPR001005SANT/Myb domain
SuperFamilySSF466895.1E-15862IPR009057Homeodomain-like
PfamPF002496.2E-151251IPR001005SANT/Myb domain
CDDcd001672.05E-62951No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 214 aa     Download sequence    Send to blast
MNRYYIVTKE WWSEEEERVL VEVHEQLGNR WSEIAKRIPG RSENSIKNHW NATMRRQLSK  60
RRMRSASLQD VGGSRKSVVL HNYIKYKYFS GLALGPLVPV PEHPSIQQQV NVDDSPSILT  120
ETYDEEMTFL QKLFGNSSSS SPSTAVNNNS AEFAAFGRRT NEDSVAAEEE DSWSTYLATD  180
PNLYEIGGAD QINSTPQAAA PKPLAKSSNY YLNY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1idy_A2e-18758354MOUSE C-MYB DNA-BINDING DOMAIN REPEAT 3
1idz_A2e-18758354MOUSE C-MYB DNA-BINDING DOMAIN REPEAT 3
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019178330.18e-91PREDICTED: myb-related protein B-like
TrEMBLA0A328DBS54e-47A0A328DBS5_9ASTE; Uncharacterized protein
TrEMBLA0A484NCI63e-48A0A484NCI6_9ASTE; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA48251941
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58850.12e-18myb domain protein 119