PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc012560.1_g00001.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family FAR1
Protein Properties Length: 234aa    MW: 26291.8 Da    PI: 9.2251
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc012560.1_g00001.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR141.73.7e-1315106790
                     FAR1   7 AkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.........tekerrtraetrtgCkaklkvkkekdgkwevtklel 83 
                              A++ GF+vr s+ k++ r g +  + + Cs+eg++ +++++         ++ + r+r+++r+gC a+  +k+ kdg++ ++ l +
  Itr_sc012560.1_g00001.1  15 ATSQGFDVRSSTVKRN-RYGDVELKYLLCSREGYTVTKEQRstttgeangANINTRRRVSNRVGCMARCALKRLKDGHYAINVLIE 99 
                              7789********9999.6666999**********98888878999999888888899***************************** PP

                     FAR1  84 eHnHela 90 
                               H H l+
  Itr_sc012560.1_g00001.1 100 THKHRLC 106
                              *****98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031015.7E-1015106IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    Send to blast
MSNGGSGQIL TLRPATSQGF DVRSSTVKRN RYGDVELKYL LCSREGYTVT KEQRSTTTGE  60
ANGANINTRR RVSNRVGCMA RCALKRLKDG HYAINVLIET HKHRLCDKEA NKFLKINRNL  120
GIGHQVFIAA CEKANIGTSK AFELYSVLGG GVDSVGATCI DFRNCRRDVQ AQVHNADAQS  180
IIEKYAKKKT LFATYTFDYD VDDEQKLCRV FWCDPIAKQN YLQFGEMVSF DATY
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA3136228
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.13e-17FAR1-related sequence 5